GATK caveat

1. 选择/过滤

VariantFiltration: Filter variant calls based on INFO and/or FORMAT annotations
output: A filtered VCF in which passing variants are annotated as PASS and failing variants are annotated with the name(s) of the filter(s) they failed.
SelectVariants:    Select a subset of variants from a VCF file.
output:
1.如果一个值缺失,VariantFiltration会认为这条值所在的记录通过检查,而SelectVariants认为这条记录不能通过检查。

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