GATK caveat

1. 选择/过滤

Vari­ant­Fil­tra­tion: Fil­ter vari­ant calls based on INFO and/or FORMAT anno­ta­tions
out­put: A fil­tered VCF in which pass­ing vari­ants are anno­tat­ed as PASS and fail­ing vari­ants are anno­tat­ed with the name(s) of the filter(s) they failed.
Select­Vari­ants:    Select a sub­set of vari­ants from a VCF file.
out­put:
1.如果一个值缺失,VariantFiltration会认为这条值所在的记录通过检查,而SelectVariants认为这条记录不能通过检查。

2.foobar

 

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